Comparison of species distribution models in determining the habitat landscape of Pistacia vera L. specie in Razavi Khorasan province

Document Type : Research/Original/Regular Article

Authors

1 Graduated Ph.D. Student/ Natural Resources Engineering Department, Faculty of Agriculture and Natural Resources, University of Hormozgan, Hormozgan, Iran

2 Associate Professor/ Department of Watershed Management, Faculty of Natural Resources and Environment, University of Birjand, Birjand, Iran

3 Ph.D. Student/ Rehabilitation Arid and Mountainous Regions Department, Faculty of Natural Resources, University of Tehran, Karaj, Iran

4 Graduated M.Sc. Student/ Natural Resources Engineering Department, Faculty of Natural Resources, University of Tehran, Karaj, Iran

Abstract

Introduction
Global climate change has led to change in the ecological amplitude of plant growth, expand plant adaptation to hot climates, and decrease plant adaptation to cold climates. Climate change resulting from human activities occurs at such a speed that many species will not be able to adapt to it. These changes have led to a change in the range of plants growth. Such high-speed changes have caused subsequent changes in the structure and entire ecosystems of the earth, therefore predicting the effect of climate change on the distribution of plant species has become a major field of research for its conservation measures and programs. Changes in the range of distribution of plants are mostly predicted by species distribution models. In this sense, every environmental factor affecting the distribution of plant species has a minimum, maximum and optimal value, which, in combination with other factors, separates the territory of the species and forms an ecological niche. These models are used to investigate species distribution and are based on ecological niche theory. This research was conducted with the aim of determining the potential habitats of Pistacia vera L. species and the factors affecting it in the present and future in Razavi Khorasan province.
 
Materials and Methods
For this purpose, 28 bioclimatic variables including topographic (4 cases), climatic (19 cases), soil (4 cases), and geological (1 case) factors as prediction variables have been analyzed for the correlation coefficient. The variables with high correlation (more than 80 %) have been removed. Environmental variables in ASCII format along with presence points were added for modeling in R software of the desired species. According to the size of the study area, sampling of data points was done based on the field visit during the period 2021-2022 from the introduced areas. through using the Global Positioning System (GPS) of 129 points from 8 regions (as points of presence) were recorded. Then, in order to prevent spatial autocorrelation and reduce the sampling error, the useful areas were converted into 1000×1000 meters grids in ArcGIS 10.5 software, and one presence point was obtained from each cell. In the modeling process, 70 % of the presence points (Pistacia vera L.) were used to generate models and 30 % of the presence points were used to evaluate the performance of the models. Also, to increase the modeling accuracy, the number of repetitions was considered 10. Then all data and points through R software and using Biomed 2 package models including GLM, GBM, CTA, ANN, SRE, FDA, MARS, RF, and MaxEnt Phillips models, in determining the relationship between vegetation and environmental factors in rangelands of Khorasan Razavi province at current and future distribution of this species in 2080-2100 were predicted under climate scenarios ssp1-2.6 and ssp5-8.5 model. The accuracy of the models was evaluated using the values of KAPPA, TSS and ROC indices, which are prominent and widely used indices for determining and identifying the areas of equal potential.
 
Results and Discussion
The variables of climatic factors were removed from the modeling due to the high correlation of 80 %, and the analysis was done using four topographic factors, eight climatic factors, four soil factors and one geological factor. The results of this research showed that according to the accuracy evaluation index, the best modeling for the present time is done by the random forest (RF) model with the ROC, KAPPA, and TSS equal to 100. In the future, the 2.6 and 8.5 scenarios of the random forest model for the ROC, KAPPA, and TSS indicators, with the accuracy of 0.999, 0..982, and 0.989 respectively, have the highest level of accuracy; Also, in the random forest model, the factors that had the greatest impact included: Bio12 (annual precipitation) and Bio15 (seasonal precipitation changes) and land unit at the present time, in the future time under the scenario 2.6 Bio12 (annual precipitation) and Bio15 (seasonal precipitation changes) and DEM and in the scenario 8.5 Bio15 (seasonal precipitation changes) and Bio12 (annual precipitation) and aspect. The results of the relative importance show the great influence of climatic factors on the distribution of this species. It is most present in the habitat with an annual rainfall of 200-285 mm, and more than this amount of rainfall was associated with a decrease in suitability for the establishment of the species. Besides, the height of 800-1300 meters above sea level and rainfall changes up to 7.8 mm in seasonal rainfall also had a positive effect on the suitability of the habitat for the presence of wild pistachio. Also, the most desirable habitat is in low to relatively high hills with a rounded and sometimes flat top consisting of limestone, metamorphic, conglomerate, and shale sandstones and a slope of 40 to 50 % and with shallow to relatively deep gravelly soils. The highest distribution of Pistacia vera L. species is in the northeastern region to the east of Khorasan province. In general, by examining the outputs of the random forest model and comparing the areas prone to the growth of Pistacia vera L. species in the present and future climate scenarios, it can be stated that the trend of stable habitat in the province can be expected.
 
Conclusion
The results of this research can be used to identify areas prone to growth, improvement, development, protection, economic exploitation, and expansion of the habitat of Pistacia vera L. species. From the ecological point of view, the wild pistachio species is considered as one of the most important factors preventing and destroying land in the high mountains of arid and semi-arid regions in many geographical and ecological regions. On the other hand, the economic importance and the income-generating aspect of wild pistachios are also important for local operators. In general, it can be stated that vector machine models provide very good performance for identifying such prone areas. In this research, an attempt was made to evaluate different species distribution vector machine models, and then the most suitable model, which was random forest, was selected.

Keywords

Main Subjects


References
Abdollahi, J., & Naderi, H. (2012). Soil and topographical variation influencing the growing factors of artemisia sieberi in steppic rangeland, Nodoushan-Yazd. Watershed Researchs (Research and Construction), 25(4), 52-62. [In Persian]
Akihiko, I., & Hajima, T. (2020). Biogeophysical and biogeochemical impactsof land-use change simulated by MIROC-ES2L. Progress in Earth and Planetary Science, 7(1), 1-15. doi:10.1186/s40645-020-00372-w
Almasieh, K., Zoratipour, A., & Negaresh, K. (2020). Habitat suitability and connectivity assessment for a range plant Behbahanian knapweed (Centaurea pabotii) in Southwest of Iran as an invader for wheat fields. Journal of Range and Watershed Managment, 73(3), 578-598. doi:10.22059/jrwm.2020.294764.1447  [In Persian]
Arazi, S., & Sarhangzadeh, J. (2020). Habitat suitability of Francolinus francolinus in Sistan region. Journal of Environmental Science Studies, 5(4), 3115-3123.
Ardestani, E.G., Tarkesh, M., Bassiri, M., &. Vahabi, M.R. (2015). Potential habitat modeling for reintroduction of three native plant species in central Iran. Journal of Arid Land, 7(3), 381- 390. doi:10.1007/s40333-014-0050-4
Barnes, P.W., & Harrison, A.T. (1982). Species distribution and community organization in a Nebraska Sandhills mixed prairie as influenced by plant/soil water relationships. Oecologia (Berlin), (52), 192–201. doi:10.1007/bf00363836
Bellard C., Bertelsmeier, C., Leadley, P., Thuiller, W., & Courchamp, F. (2012). Impacts of climate change on the future of biodiversity. Ecology Letters, 15(4), 365-377.
Cheaib, A., Badeau, V., Boe, J., Chuine, I., Delire, C., Dufrene, E., Franc, C.,. Gritti, E.S, Legay, M. (2012). Climate change impacts on tree ranges: model intercomparison facilitates understanding and quantification of uncertainty. Ecology Letters, 15, 533–544. doi:10.1111/j.1461-0248.2012.01764.x
Cheng, L., Lek, S., Lek-Ang, S., & Li, Z. (2012). Predicting fish assemblages and diversity in shallow lakes in the Yangtze River basin. Limnologica-Ecology and Management of Inland Waters, 42(2), 127-136. doi:10.1016/j.limno.2011.09.007
Diaz-Varela R.A., Colombo, R., Meroni, M., Calvo-Iglesias, M.S., Buffoni, A., & Tagliaferri, A. (2010). Spatio-temporal analysis of alpine ecotones: a spatial explicit model targeting altitudinal vegetation shifts. Ecological Modelling, 221, 621–633. doi:10.1016/j.ecolmodel.2009.11.010
Ernakovich, J.G., Hopping, K.A., Berdanier, A.B., Simpson, R.T., Kachergis, E.J., Steltzer, H., & Wallenstein, M.D. (2014). Predicted responses of arctic and alpine ecosystems to altered seasonality under climate change. Global Change Biology, 20, 3256–3269. doi:10.1111/gcb.12568
Esmaili, R., Montazeri, M., Esmaeilnejad, M., & Saber Truth, A. (2011). Climatic zoning of Khorasan Razavi using multivariate statistical methods. Climatology Research, 2(7-8), 43-56.
Feeley, K.J., Silman, M.R., Bush, M.B., Farfan, W., Cabrera, K.G., Malhi, Y., Meir, P., Revilla, N.S., Quisiyupanqui, M.N.R., & Saatchi, S. (2011). Upslope migration of Andean trees. Journal of Biogeography, 38, 783–791. doi:10.1111/j.1365-2699.2010.02444.x
Fielding, A.H., & Bell, J.F. (1997). A review of methods for the assessment of prediction errors in conservation presence/absence models. Journal of Environmental Conservation, 24 (2), 38-49. doi:10.1017/s0376892997000088
Flagmeier, M., Long, D.G., Genney, D.R., Hollingsworth, P.M., Ross, L.C., & Woodin, S.J. (2014). Fifty years of vegetation change in oceanic-montane liverwort-rich heath in Scotland. Plant Ecology Diversity, 7, 457– 470.
Galton, F. (1892). Finger prints Macmillan. London, 216 pages.
Gauch, H.G., & Whittaker, R.H. (1972). Coenocline simulation. Journal Ecology, (53), 446–451. doi:10.2307/1934231
Gholinejad, B., Jaffari, M., Zarechahuki, M.A., Azarnivand, H., & Pourbabaei, H. (2014). Environmental and managerial factors effects on plant species distribution (Case study: Saral rangelands of Kurdistan province). Journal of Range and Watershed Management, 67(2), 279-288. doi:10.22059/jrwm.2014.51832 [In Persian]
Golestaneh, S.R., Karampour, F., & Farrar, N. (2012). Introduction of the destructive agents affecting wild almond Amygdalus scoparia forests in Koh-Siah Dashti area in Bushehr Province. Journal of Forest and Range Protection Research, 10, 153-164.
Guisan, A., & Thuiller, W. (2005). Predicting species distribution: offering more than simple habitat models. Ecology Letters , 8, 993–1009. doi:10.1111/j.1461-0248.2005.00792.x
Haidarian Aghakhani, M., Tamartash, R., Jafarian, Z., Tarkesh Esfahani, M., & Tatian, M. (2017). Forecasts of climate change effects on Amygdalus scoparia potential distribution by using ensemble modeling in Central Zagros. Journal of RS and GIS for Natural Resources, 8(3), 1-14.
Heikkinen, R.K., Luoto, M., Araújo, M.B., Virkkala, R., Thuiller, W., & Sykes, M.T. (2006). Methods and uncertainties in bioclimatic envelope modelling under climate change. Progress in Physical Geography: Earth and Environment, 30(6), 751-777. doi:10.1177/0309133306071957
Helm, A., Hanski, I., & Pärtel, M. (2006). Slow response of plant species richness to habitat loss and fragmentation. Ecology letters, 9(1), 72-77. ‏doi:10.1111/j.1461-0248.2005.00841.x
Hirzel, A.H., & Guisan, A. (2002). Which is the optimal sampling strategy for habitat suitability modelling. Ecological Modelling, 157 (2–3), 331–341. doi:10.1016/s0304-3800(02)00203-x
Jarvie, S., & Svenning, J.C. (2018). Using species distribution modelling to determine opportunities for trophic rewilding under future scenarios of climate change. Philosophical Transactions of the Royal Society B: Biological Sciences, 373(1761), 170-201. doi:10.1098/rstb.2017.0446
Khajeddin, S.J., & Yeganeh, H. (2010). The relationship between plant species in no-hunting area of vulture with postal and elevation factors and climate. Journal of Rangeland, 4(3), 380-391. [In Persian]
Kumari, P., Wani, I.A., Khan, S., Verma, S., Mushtaq, S., Gulnaz, A., & Paray, B.A. (2022). Modeling of valeriana wallichii habitat suitability and niche dynamics in the Himalayan Region under anticipated climate change. Biology, 11, 498. doi:10.3390/biology11040498
Momeni Damaneh, J., Esmaeilpour, Y., Gholami, H., & Farashi, A. (2022). Prediction of potential habitats of Astracantha gossypina (Fisch.) Using the maximum entropy model in regional scale. Journal of Plant Ecosystem Conservation, 9(19), 217-236. [In Persian]
Momeni Damaneh, J., Esmaeilpour, Y., Gholami, H., & Farashi, A. (2021). Properly predict the growth of (Ferula assa-foetida L.) in northeastern Iran using the maximum entropy model. Journal of Range and Desert Research of Iran, 28(3), 587-592. doi:10.22092/ijrdr.2021.125016 [In Persian]
Mozzafarian, V. )2012(. Recognition of medicinal and aromatic plants of Iran. 1th Edition: Tehran Farhang-e Moaser publications, 1444 pages. [In Persian]
Oksanen, J., & Minchin, P.R. (2002). Continuumtheory revisited: what shape are species responses along ecological gradients. Ecological Modelling, (157), 119–129. doi:10.1016/s0304-3800(02)00190-4
Pearson, R.G., Thuiller, W., Araújo, M.B., Martinez‐Meyer, E., Brotons, L., McClean, C., Miles, L., Segurado, P., Dawson, T.P., & Lees, D.C. (2006). Model‐based uncertainty in species range prediction. Journal of Biogeography, 33(10), 1704-1711. doi:10.1111/j.1365-2699.2006.01460.x
Phillips, S.J., Anderson, R.P., & Schapire, R.E. (2006). Maximum entropy modeling of species geographic distributions. Ecological Modelling. 190 (3), 231-259. doi:10.1016/j.ecolmodel.2005.03.026
Piri Sahragard, M., Ajorlo, M., & Karami, P. (2020). Predicting impacts offuture climate change on the distribu-tion and ecological dimension of Amygdalus scoparia Spach. Italian Journal of Agrometeorology, (2), 117-130.
Polechová, J., & Storch, D. (2008). Ecological Niche. Encyclopedia of Ecology, (2), 1088-1097.
Sarhangzadeh, J. (2019). Habitat suitability modeling for Juniper (Juniperus foetidissima) in Arasbaran Biosphere Reserve. Journal of Forest Research and Development, 5(1), 93-112.
Shrestha, U.B., Sharma, K.P., Devkota, A., Siwakoti, M., Shrestha, B.B. (2018). Potential impact of climate change on the distribution of six invasive alien plants in Nepal. Ecological Indicators, 95, 99-107. doi:10.1016/j.ecolind.2018.07.009
Smeeton, N.C. (1985). Early history of the kappa statistic. Biometrics, 41(3), 77-95.
Sproull, G.J., Quigley, M.F., Sher, A., Gonzalez, E. (2015). Long-term changes in composition, diversity and distribution patterns in four herbaceous plant communities along an elevational gradient. Journal of Vegetation Science, 26, 552–563. doi:10.1111/jvs.12264
Stockwell, D., & Peters, D. (1999). The GARP modelling system: problems and solutions to automated spatial prediction. International Journal of Geographical Information Science, 13(2), 143–158. https://doi.org/10.1080/136588199241391
Swets, J.A. (1988). Measuring the accuracy of diagnostic systems. Science, 240(4857), 1285-1293. doi:10.1126/science.3287615
Thuiller, W. (2014). Editorial commentary on BIOMOD-optimizing predictions of species distributions and projecting potential future shifts under global change. Global change Biology, 20(12), 3591-3592. doi:10.1111/gcb.12728
Thuiller, W., Lafourcade, B., Engler, R., & Araújo, M.B. (2009). Biomod– a platform for ensemble forecasting of species distributions. Ecography, 32 (3), 369-373. doi:10.1111/j.1600-0587.2008.05742.x
Vandermeer, J.H. (1972). Niche theory. Annual Review of Ecology and Systematics, (3), 107-132.
Walther, G.R., Post. E., Convey, P., Menzel, A., Parmesan, C., Beebee, T.J., & Bairlein, F. (2002). Ecological responses to recent climate change. Nature, 416(6879), 389-395.
Wiens, J.A., Stralberg, D., Jongsomjit, D., Howell, C.A., & Snyder, M.A. (2009). Niches, models, and climate change: assessing the assumptions and uncertainties. Proceedings National Academy Sciences USA, 106, 19729–19736. doi:10.1073/pnas.0901639106
Yi, Y.J., Cheng, X., Yang, Z.F., & Zhang, S.H.. (2016). Maxent modeling for predicting the potential distribution of endangered medicinal plant (H. riparia Lour) in Yunnan, China. Ecological Engineering, (92), 260-269. doi:10.1016/j.ecoleng.2016.04.010
Zarkami, R., Ahmadi, M., & Abedini, A. (2021). Habitat modeling of (eichhornia crassipes) in some wetlands of Guilan province. Journal of Plant Research, 34(2), 275-286. doi:10.1007/s13157-021-01405-w
Zarrabi, M., Haqdadi, R., & Yousefi, H. (2017). Modeling desirability of organic pistachio habitat (Pistacia Vera) using maxent method in Sarakhs forest area (under Gonbadli basin of Khorasan Razavi province). Ecohydrology, 4(3), 817-824. doi:10.22059/ije.2017.62636 [In Persian]
Zhang, X., Yuan, Y., Zhu, Z., Ma, Q., Yu, H., Li, M., Ma, J., Yi, S., He, X., & Sun, Y. (2021). Predicting the distribution of oxytropis ochrocephala bunge in the source region of the Yellow River (China) Based on UAV Sampling Data and Species Distribution Model. Remote Sensing, 13, 5129. doi:10.3390/rs13245129